A
ADaMsoft - Data mining, data management and reporting. Has web based features.
ADePT - Developed to automate and standardize the production of analytical reports.
ADMB - Non-linear statistical modelling.
AFGen - Fragment-based descriptors for chemical compounds (chemometrics).
AM – General stats package.
Antaeus - Data visualisation software.
AnSWR - A software system for coordinating and conducting large-scale, team-based analysis projects that integrate qualitative and quantitative techniques.
Apophenia - General stats package but with more flexibility to be creative in model building.
Arc - Applied regression including computing and graphics.
ARMiner - Data mining application specialising in finding association rules.
Assistat - General stats package.
AutoClass - Data mining (clustering) program from NASA’sAmes Research Center
B
BAMarray - Java software for microarray data. Implements Bayesian Analysis of Variance for Microarrays (BAM).
Bayesian Filtering Library - Bayesian software for use in advanced machine and robot control.
BiNGO - Bioinformatics software. Biological Network Gene Ontology.
BioEstat - Ecological statistics program (only available in Portuguese).
Biogeme - Stands for: Bierlaire's Optimization Toolbox for GEV (Generalized Extreme Value) Model Estimation.
Biomapper - AGIS -toolkit to model ecological niche and habitat suitability.
BKD - Bayesian Knowledge Discoverer
BlockTreat - A general frequentistMonte Carlo program for block and treatment tests, tests with matching, k-sample tests, and tests for independence.
BrightStat - General stats package.
BV4.1 - A procedure for the decomposition and seasonal adjustment of monthly and quarterly economic series. Used by the German Federal Statistical Office.
C
Calcugator - Calculator, plotting engine, and programming environment.
Caleydo - Bioinformatics data visualisation software.
C.a.R - Stands for Compass and Ruler. Geometry software (Euclidean and non-Euclidean geometry).
CCOUNT - Designed for market research purposes, including: data cleaning, manipulation, cross tabulation and data analysis. Similar toSPSS .
CDC EZ-Text - Developed to assist researchers create, manage, and analyze semi-structured qualitative databases.
Chronux - Developed for the analysis of neural data.
Citation Statistics Scraper - An Excel macro to scrape citation statistics from certain websites.
CLUTO - Data mining software for clustering high-dimensional datasets.
CodeTwo Outlook Export - Tool for exporting data from Microsoft Outlook to CSV text files.
COIN-OR - COmputational INfrastructure for Operations Research.
Conc - Text concordance program.
Concorder - Text concordance program. Allows you to take given texts and find out the frequency of words.
ConvertData - Converts structured data from one form to another.
CropStat - General stats package. Designed for analysis of agricultural field trials data. Formerly known as IRRIStat.
CSPro - Census and Survey Processing System (CSPro) is a questionnaire-oriented statistical package for Windows.
Cytoscape - Bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
D
DAD - Designed to facilitate the analysis of socio-economic data, and includes functions for estimating indices, curves for distributive comparisons, and asymptotic standard errors for statistical inference.
DAP - Alternative to SAS.
Database Browser Portable - Connect to databases, browse or modify data, run SQL scripts, export and print data. Works directly with Oracle, MS Sql Server, ODBC, MySql, PostgreSQL, SQLite, Ole DB, Interbase and Firebird.
Dataplot - General stats package. Designed for science and engineering.
DAVID - Bioinformatics software. Database for Annotation, Visualization and Integrated Discovery.
dChip - Bioinformatics software. dChip Software: Analysis and visualization of gene expression and SNP microarrays
Deducer - Graphical user interface (GUI) for R.
Demetra - Time series package.
Dia - Diagram drawing program. Allows the drawing of entity relationship diagrams, UML diagrams, flowcharts, network diagrams, and many others.
Draco - Econometrics package with spreadsheets.
E
EASE - Bioinformatics software. Expression Analysis Systematic Explorer.
EasyReg Int. - Econometrics package.
EasySample - Simple sampling program.
EDGAR - Experimental design programs.
Eigenmath - A computer algebra system that facilitates the manipulation of mathematical expressions in symbolic form.
ELKI - Environment for developing KDD-applications supported by index-structures. Compares data mining algorithms.
EMMIX - Fortran software to fit mixture models.
Epi Info - Designed for epidemiologists and other public health and medical professionals.
Epidata - Epidemiology package.
EqPlot - Equation graph plotter.
Erlang Calculator - Erlang B and C calculator. Used in call centers to predict service quality.
ErmineJ - Bioinformatics software. Performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes.
ESA - Event Structure Analysis (ESA ) is an on-line Java program that helps you analyze sequential events.
ESS - Emacs Speaks Statistics. Add-on package for emacs text editors.
EST - Chemometrics program. Excel add-in (xla) for the simulation of chemical equilibria in solution.
Esta+ - General (and simple) stats package.
Euler - Similar to Matlab.
EVE - Embedded Vector Editor. Vector graphics program.
Excellent Analytics - Excel plug-in that lets you import web analytics data from Google Analytics into a spreadsheet.
EzANOVA - Simple ANOVA program.
F
FACET - Psychometrics program. Facet Analysis, Smallest Space Analysis, Multidimensional Scalogram Analysis, Partial Order Scalogram Analysis.
Factor - Simple factor analysis program.
Firebird - Relational database management system (RDBMS).
Fityk - Nonlinear least squares curve fitting.
FlexArray - Bioinformatics program. Statistical analysis and visualization of microarray expression data. Free to academic and government researchers.
Freemat - Similar to Matlab and IDL.
G
ADePT - Developed to automate and standardize the production of analytical reports.
ADMB - Non-linear statistical modelling.
AFGen - Fragment-based descriptors for chemical compounds (chemometrics).
AM – General stats package.
Antaeus - Data visualisation software.
AnSWR - A software system for coordinating and conducting large-scale, team-based analysis projects that integrate qualitative and quantitative techniques.
Apophenia - General stats package but with more flexibility to be creative in model building.
Arc - Applied regression including computing and graphics.
ARMiner - Data mining application specialising in finding association rules.
Assistat - General stats package.
AutoClass - Data mining (clustering) program from NASA’s
B
BAMarray - Java software for microarray data. Implements Bayesian Analysis of Variance for Microarrays (BAM).
Bayesian Filtering Library - Bayesian software for use in advanced machine and robot control.
BiNGO - Bioinformatics software. Biological Network Gene Ontology.
BioEstat - Ecological statistics program (only available in Portuguese).
Biogeme - Stands for: Bierlaire's Optimization Toolbox for GEV (Generalized Extreme Value) Model Estimation.
Biomapper - A
BKD - Bayesian Knowledge Discoverer
BlockTreat - A general frequentist
BrightStat - General stats package.
BV4.1 - A procedure for the decomposition and seasonal adjustment of monthly and quarterly economic series. Used by the German Federal Statistical Office.
C
Calcugator - Calculator, plotting engine, and programming environment.
Caleydo - Bioinformatics data visualisation software.
C.a.R - Stands for Compass and Ruler. Geometry software (Euclidean and non-Euclidean geometry).
CCOUNT - Designed for market research purposes, including: data cleaning, manipulation, cross tabulation and data analysis. Similar to
CDC EZ-Text - Developed to assist researchers create, manage, and analyze semi-structured qualitative databases.
Chronux - Developed for the analysis of neural data.
Citation Statistics Scraper - An Excel macro to scrape citation statistics from certain websites.
CLUTO - Data mining software for clustering high-dimensional datasets.
CodeTwo Outlook Export - Tool for exporting data from Microsoft Outlook to CSV text files.
COIN-OR - COmputational INfrastructure for Operations Research.
Conc - Text concordance program.
Concorder - Text concordance program. Allows you to take given texts and find out the frequency of words.
ConvertData - Converts structured data from one form to another.
CropStat - General stats package. Designed for analysis of agricultural field trials data. Formerly known as IRRIStat.
CSPro - Census and Survey Processing System (CSPro) is a questionnaire-oriented statistical package for Windows.
Cytoscape - Bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
D
DAD - Designed to facilitate the analysis of socio-economic data, and includes functions for estimating indices, curves for distributive comparisons, and asymptotic standard errors for statistical inference.
DAP - Alternative to SAS.
Database Browser Portable - Connect to databases, browse or modify data, run SQL scripts, export and print data. Works directly with Oracle, MS Sql Server, ODBC, MySql, PostgreSQL, SQLite, Ole DB, Interbase and Firebird.
Dataplot - General stats package. Designed for science and engineering.
DAVID - Bioinformatics software. Database for Annotation, Visualization and Integrated Discovery.
dChip - Bioinformatics software. dChip Software: Analysis and visualization of gene expression and SNP microarrays
Deducer - Graphical user interface (GUI) for R.
Demetra - Time series package.
Dia - Diagram drawing program. Allows the drawing of entity relationship diagrams, UML diagrams, flowcharts, network diagrams, and many others.
Draco - Econometrics package with spreadsheets.
E
EASE - Bioinformatics software. Expression Analysis Systematic Explorer.
EasyReg Int. - Econometrics package.
EasySample - Simple sampling program.
EDGAR - Experimental design programs.
Eigenmath - A computer algebra system that facilitates the manipulation of mathematical expressions in symbolic form.
ELKI - Environment for developing KDD-applications supported by index-structures. Compares data mining algorithms.
EMMIX - Fortran software to fit mixture models.
Epi Info - Designed for epidemiologists and other public health and medical professionals.
Epidata - Epidemiology package.
EqPlot - Equation graph plotter.
Erlang Calculator - Erlang B and C calculator. Used in call centers to predict service quality.
ErmineJ - Bioinformatics software. Performs analyses of gene sets in expression microarray data or other genome-wide data that results in rankings of genes.
EST - Chemometrics program. Excel add-in (xla) for the simulation of chemical equilibria in solution.
Esta+ - General (and simple) stats package.
Euler - Similar to Matlab.
EVE - Embedded Vector Editor. Vector graphics program.
Excellent Analytics - Excel plug-in that lets you import web analytics data from Google Analytics into a spreadsheet.
EzANOVA - Simple ANOVA program.
F
FACET - Psychometrics program. Facet Analysis, Smallest Space Analysis, Multidimensional Scalogram Analysis, Partial Order Scalogram Analysis.
Factor - Simple factor analysis program.
Firebird - Relational database management system (RDBMS).
Fityk - Nonlinear least squares curve fitting.
FlexArray - Bioinformatics program. Statistical analysis and visualization of microarray expression data. Free to academic and government researchers.
Freemat - Similar to Matlab and IDL.
G
G Power - Power and sample size calculator.
G7 - Econometrics package. Allows the building and useage of data banks.
GAP - Groups, Algorithms, Programming - A System for Computational Discrete Algebra.
GATE - Text mining program. General Architecture for Text Engineering.
gCLUTO - Data mining program. Graphical clustering toolkit.
gdcalc - Gdcalc is a financial, statistics, scientific and programmers calculator.
Gemma - Bioinformatics software. Database and software system for the meta-analysis of gene expression data.
GEMS - Bioinformatics software (online forms). Gene Expression Module Sampler.
GenePattern -Bioinformatics software. Genomic analysis platform that provides access to more than 125 tools for gene expression analysis, proteomics, SNP analysis and more.
GeNIe - Graphical Network Interface. The graphical interface to SMILE.
GenMAPP - Bioinformatics software. Designed to visualize gene expression and other genomic data on maps representing biological pathways and groupings of genes.
GeoDa - Geospatial analysis and computation.
GeoGebra - Geometry software.
Gephi - Interactive visualization and exploration platform for all kinds of networks and complex systems, dynamic and hierarchical graphs.
GGobi - Data visualisation.
Gist - Bioinformatics software. Contains software tools for support vector machine classification and for kernel principal components analysis.
Gitools - Bioinformatics Program. A framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps.
GLPK - GNU Linear Programming Kit.
GMM-GMR - Gaussian Mixture Model and Regression.
Gnumeric - Spreadsheet program.
Gnuplot - Command driven graphing program.
GOBLIN - Graph optimization software.
Goldvarb - Designed to facilitate the statistical analysis of linguistic variables and social variables. Previously known as Varbrul.
GoMiner - Bioinformatics software. A tool for biological interpretation of 'omic' data, including data from gene expression microarrays.
Google Plotter - A tool for adding statistical information to Google maps.
Gostat - Bioinformatics software (online forms). Find statistically overrepresented Gene-Ontology (GO) terms within a group of genes.
Gretl - Stands for Gnu regression, econometrics and time-series library. Alternative to EViews. REVIEWED!!!
Grocer - An econometric toolbox for Scilab.
GUIDE - Multi-purpose machine learning algorithm for constructing classification and regression trees.
H
HLM - Hierarchical linear and nonlinear modelling.
hMETIS - A set of programs for partitioning hypergraphs such as those corresponding to VLSI circuits.
I
IHMC CmapTools - Concept mapping program.
Instats - General stats package.
Interactive Statistical Unit -
Inverse Symbolic Calculator - An online form where the output is a list of possible sources for the number you enter (such as simple equations or well known constants).
IVEware - Imputation and Variance Estimation.
J
JAGS - Stands for just another Gibbs sampler. Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC).
Java Treeview - Extensible Viewer for Microarray Data in the PCL or CDT format.
jHepWork - Mathematics and statistics package.
JMulTi - Time series and econometrics package.
K
Kyplot - Graphs program.
L
LazStats - Menu driven general statistics program.
LimeSurvey - Survey application.
Lisp-stat - General stats package with emphasis on graphics.
LISREL - Originally limited to structural equation modelling (SEM) but now has other functions.
LiveInternet Site Statistics - A Google Chrome extension that lets you find at a glance the number of visitors and other data about the current webpage.
logQL - Flexible data analysis tool that employs a simple query language to generate the reports (also known as Log Parser QL).
M
MacAnova - General stats package.
MacSHAPA - Macintosh-based software environment that supports observational data analysis, including the analysis of video.
Matrixer - Econometrics package.
Matrix2png - Bioinformatics software. A simple program for making visualizations of microarray data and many other data types.
Matvec - Current capabilities range from matrix and vector manipulation to the analysis of linear and generalized linear mixed models.
Maxima - A computer algebra system. Mathematics program.
METIS - A set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices.
MGridGen - Multilevel serial & parallel coarse grid construction library.
MicroConcord - Text concordance program.
MicrOsiris - Statistical and data management package.
Microsoft Excel Viewer - Open, view, and print Excel workbooks, even if you don't have Excel installed.
Ministep - Constructs Rasch measures from simple rectangular data sets.
MINUIT - Physics analysis tool for function minimization.
Mondrian - Data visualisation.
MorePower - Statistical power calculator for hypothesis tests.
MONSTER -Minnesota
Mx - Matrix algebra interpreter and numerical optimizer for structural equation modelling and other types of statistical modelling of data.
MYSTAT - Free SYSTAT version for students.
N
NLTK - Text mining program. Natural Language Toolkit.
NORM - Multiple imputation of multivariate continuous data under a normal model.
O
Octave - Similar to Matlab.
Onto-Tools - Bioinformatics programs. Onto-Express, Onto-Compare, Onto-Design, Onto-Translate, Onto-Miner, Pathway-Express, Promoter-Express, nsSNPCounter, OE2GO, KUTE-BASE.
OpenBUGS - Bayesian inference using Gibbs sampling.
Open Code - A tool for coding qualitative data generated from text information such as interviews, observations or field notes.
OpenEpi - Epidemiology package.
OpenOffice - Open source alternative to Microsoft Office. Includes Calc, an alternative to Excel.
OpenStat - Menu driven general statistics program.
Orange - Data mining through visual programming or Python scripting. Extensions for bioinformatics and text mining.
P
PAFI - A set of programs (LPMiner, SLPMiner and FSG) that can be used to find frequent patterns in large and diverse databases.
PAM
PAMCOMP - Person-years And Mortality COMputation Program.
PARI/GP - Computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves), and contains functions for mathematical entities such as matrices, polynomials, power series, algebraic numbers etc.
ParMETIS - Extends the functionality provided by METIS and includes routines that are especially suited for parallelAMR computations and large scale numerical simulations.
PAST - Statistics program for palaeontology.
PCP - Pattern Classification Program.
PINT - Power analysis IN Two-level designs (for determination of standard errors and optimal sample sizes in multilevel designs with 2 levels).
Ploticus - Graphs program.
PlotLab VCL - Delphi/C++ Builder VCL components library for very fast Data Visualization
PopTools - Population modelling program.
POSDEM - A program to choose between sampling plans based on the population frame.
PostgreSQL - Relational database management system (RDBMS).
PQRS - Stands for probabilities, quantiles and random samples.
Program Mark - Ecological statistics program. Advanced mark-recapture modelling.
PS - Power and sample size calculator.
PSPASES - Parallel SPArse Symmetric dirEct Solver (intended for solving linear systems of equations).
PSPP - Alternative to SPSS. REVIEWED!!!
Q
QCA - Qualitative Comparative Analysis is a special-purpose program designed to analyze quantified data from multiple cases.
QPL - Questionnaire Programming Language.
Quail - Quantitative analysis in Lisp.
R
R - Widely used alternative to SPlus.
R AnalyticFlow - R front-end which allows data analysis by drawing flowcharts.
R Commander - GUI interface for R.
RapidMiner - Data mining.
Red R - Visual programming interface for R.
REG -X - Econometrics package which has functions for cointegration analysis, spectral analysis, dynamic modelling, Kalman Filtering and GARCH-M estimation.
Regress+ - Mathematical modelling for the Macintosh.
RKWard - A transparent front-end for R.
RMAexpress - Bioinformatics software. A standalone GUI program to compute gene expression summary values for Affymetrix Genechip data.
Rosetta - A rough set toolkit for data analysis / data mining.
RStudio - An integrated development environment (IDE) for R.
Ruby Stats - Port of the statistics libraries from PHPMath.
Rule Discovery System - Data mining program.
Rundom Pro - General stats package with emphasis on resampling procedures.
Rweb - An online form that processes R commands.
S
|STAT - General stats package.
Sage - Mathematics software.
SalStat - General stats package designed for the analysis of science and psychology data.
SAM - Bioinformatics software. Sequence Alignment and Modeling System.
SaTScan - Analyzes spatial, temporal and space-time data using the spatial, temporal, or space-time scan statistics.
SciDAVis - Scientific Data Analysis and Visualization.
Scilab - Numerical computation.
Shogun - A large scale machine learning toolbox.
SignalLab VCL - Delphi/C++ Builder VCL components library, for fast Digital Signal Processing (DSP) and for data visualization.
Simfit - Simulation, curve fitting, statistics, and plotting.
Simple Solver - Design and analysis of Boolean equations and state machines.
Simplex Method Tool - An online form that solves linear programming problems.
SimulME - A Java ME (J2ME) application with queuing calculator, Monte Carlo simulation and more. Compatible with Sony-Ericsson, Samsung, Motorola and other cell phones.
SINGULAR - Computer algebra system for polynomial computations, with special emphasis on commutative and non-commutative algebra, algebraic geometry, and singularity theory.
SIPINA - Statistical classification program.
SL Gallery - Statistical distribution graphs and calculations.
Smereka - Extensible personal freeform database and personal information manager.
SMILE - Structural Modeling, Inference, and Learning Engine. A library of C++ classes implementing graphical decision-theoretic methods, directly amenable to inclusion in intelligent systems.
SNNS -Stuttgart
SOCR - Stands for statistics online computational resource. General stats package.
SOFA Statistics - Statistics, analysis and reporting program.
Software for Permutation Methods: A Distance Function Approach
SolverStat - Excel add-in which complements Excel's built-in Solver package by providing additional statistical analysis of nonlinear regressions.
Sonar - Survey administration and data collection system.
Sonson - Solution for digitizing vector data from images.
SpeQ Mathematics - Calculations and graphs.
SpreadCE - Spreadsheet program.
SQL Dumper - Allows the dumping of an SQL Server Database into SQL INSERT statements, containing all the data required to create a duplicate table, or to be used for backup purposes.
SSP (Smith's Statistical Package) - General stats package.
StatCalc - A Calculator that computes table values of 34 statistical distributions. It also computes moments, and many other statistics.
StatEasy - General stats package.
Statext - Statistics expressed in text (even the graphs).
Statibot - An interactive www-based expert system for basic statistical analysis.
Statist - General stats package.
Statistical Lab - R based general stats package.
Statistics 101 - Simulations / resampling methods.
STATPerl - General stats package based on Perl.
Stattucino - Web spreadsheets with data analysis functions.
SUGGEST - Recommendation engine.
Swamy TVC Estimation - Econometrics package which performs the time varying coefficient estimation to decompose a set of parameters into their biased and bias free components.
T
TAMS - Text mining program. Text Analysis Mark-up System. Identifies themes in texts.
TANAGRA - Data mining program. REVIEWED!!!
TerraView - GIS application that allows database queries and data analysis.
Tetrad - Search algorithms and statistical modelling.
TextStat - Text concordance program. A program for the analysis of texts.
TimesLab - Time series analysis program.
Tinn-R - R code text editor.
TMeV - Bioinformatics software. Normalized and filtered expression files can be analyzed using TIGR Multiexperiment Viewer (MeV).
TMS FlexAnalytics - An app to get statistics from google analytics and chart it automatically.
TSW - Time series and econometrics package.
TWOMOK - Non-parametric scale analysis for two-level data (ecometrics).
U
UIMA - Text mining program. Unstructured Information Management Architecture.
V
VisiCube - Data visualisation tool.
ViSta - Visual statistics system with work maps, guide maps and interactive graphics.
VStar - Data visualisation and analysis tool for astronomy.
VSUstat - An online statistics program with functions for experimental design and has a layout similar toSPSS . Requires a Google Chrome or Mozilla Firefox browser, and an account log-in.
W
wCLUTO - Web-enabled data clustering application that is designed for the clustering and data-analysis requirements of gene-expression analysis (bioinformatics).
Weft QDA - A tool to assist in the analysis of textual data such as interview transcripts, written texts and field notes.
Weka - Machine learning software written at the University of Waikato.
WinBUGS - Bayesian analysis using Markov chain Monte Carlo methods.
WinIDAMS - General stats package.
Winpepi - Epidemiology package.
WinSAAM - Windows version of CONSAAM. Simulation, analysis and modeling software for biology.
WordNet - A large lexical database of English.
X
X-12-ARIMA - Seasonal adjustment software produced, distributed, and maintained by the US Census Bureau.
XDAT - Visualization and analysis of multidimensional data.
XL Statistics - A set of Microsoft Excel (ver 97+) workbooks for statistical analysis of data.
XL Toolbox - Data analysis add-on for Excel.
Xnumbers - Multi precision floating point computing and numerical methods for Excel.
XploRe - Interactive statistical methods and data exploration.
Xpro - Exact parametric inference.
Xtremes - Graphics and analysis program for extreme values.
Y
YACAS - Computer algebra system for symbolic manipulation of mathematical expressions.
YASSPP - A web-based server for predicting the secondary structure elements of a protein sequence (bioinformatics).
Yorick - Interpreted programming language for scientific simulations or calculations, postprocessing or steering large simulation codes, interactive scientific graphics, and reading, writing, or translating large files of numbers.
Yxilon - Statistical programming language.
Z
Zaitun Time Series - Time series software. Has the capability to deal with stock market data.
Zelig - Based on R. Automates various processes.
G7 - Econometrics package. Allows the building and useage of data banks.
GAP - Groups, Algorithms, Programming - A System for Computational Discrete Algebra.
gCLUTO - Data mining program. Graphical clustering toolkit.
gdcalc - Gdcalc is a financial, statistics, scientific and programmers calculator.
Gemma - Bioinformatics software. Database and software system for the meta-analysis of gene expression data.
GenePattern -Bioinformatics software. Genomic analysis platform that provides access to more than 125 tools for gene expression analysis, proteomics, SNP analysis and more.
GeNIe - Graphical Network Interface. The graphical interface to SMILE.
GenMAPP - Bioinformatics software. Designed to visualize gene expression and other genomic data on maps representing biological pathways and groupings of genes.
GeoDa - Geospatial analysis and computation.
GeoGebra - Geometry software.
Gephi - Interactive visualization and exploration platform for all kinds of networks and complex systems, dynamic and hierarchical graphs.
GGobi - Data visualisation.
Gist - Bioinformatics software. Contains software tools for support vector machine classification and for kernel principal components analysis.
Gitools - Bioinformatics Program. A framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps.
GLPK - GNU Linear Programming Kit.
GMM-GMR - Gaussian Mixture Model and Regression.
Gnumeric - Spreadsheet program.
Gnuplot - Command driven graphing program.
GOBLIN - Graph optimization software.
Goldvarb - Designed to facilitate the statistical analysis of linguistic variables and social variables. Previously known as Varbrul.
GoMiner - Bioinformatics software. A tool for biological interpretation of 'omic' data, including data from gene expression microarrays.
Google Plotter - A tool for adding statistical information to Google maps.
Gostat - Bioinformatics software (online forms). Find statistically overrepresented Gene-Ontology (GO) terms within a group of genes.
Gretl - Stands for Gnu regression, econometrics and time-series library. Alternative to EViews. REVIEWED!!!
Grocer - An econometric toolbox for Scilab.
GUIDE - Multi-purpose machine learning algorithm for constructing classification and regression trees.
H
HLM - Hierarchical linear and nonlinear modelling.
hMETIS - A set of programs for partitioning hypergraphs such as those corresponding to VLSI circuits.
I
IHMC CmapTools - Concept mapping program.
Instats - General stats package.
Interactive Statistical Unit -
Inverse Symbolic Calculator - An online form where the output is a list of possible sources for the number you enter (such as simple equations or well known constants).
IVEware - Imputation and Variance Estimation.
J
JAGS - Stands for just another Gibbs sampler. Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC).
Java Treeview - Extensible Viewer for Microarray Data in the PCL or CDT format.
jHepWork - Mathematics and statistics package.
JMulTi - Time series and econometrics package.
K
Kyplot - Graphs program.
L
LazStats - Menu driven general statistics program.
LimeSurvey - Survey application.
Lisp-stat - General stats package with emphasis on graphics.
LISREL - Originally limited to structural equation modelling (SEM) but now has other functions.
LiveInternet Site Statistics - A Google Chrome extension that lets you find at a glance the number of visitors and other data about the current webpage.
logQL - Flexible data analysis tool that employs a simple query language to generate the reports (also known as Log Parser QL).
M
MacAnova - General stats package.
MacSHAPA - Macintosh-based software environment that supports observational data analysis, including the analysis of video.
Matrixer - Econometrics package.
Matrix2png - Bioinformatics software. A simple program for making visualizations of microarray data and many other data types.
Matvec - Current capabilities range from matrix and vector manipulation to the analysis of linear and generalized linear mixed models.
Maxima - A computer algebra system. Mathematics program.
METIS - A set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices.
MGridGen - Multilevel serial & parallel coarse grid construction library.
MicroConcord - Text concordance program.
MicrOsiris - Statistical and data management package.
Microsoft Excel Viewer - Open, view, and print Excel workbooks, even if you don't have Excel installed.
Ministep - Constructs Rasch measures from simple rectangular data sets.
MINUIT - Physics analysis tool for function minimization.
Mondrian - Data visualisation.
MorePower - Statistical power calculator for hypothesis tests.
MONSTER -
Mx - Matrix algebra interpreter and numerical optimizer for structural equation modelling and other types of statistical modelling of data.
MYSTAT - Free SYSTAT version for students.
N
NLTK - Text mining program. Natural Language Toolkit.
NORM - Multiple imputation of multivariate continuous data under a normal model.
O
Octave - Similar to Matlab.
Onto-Tools - Bioinformatics programs. Onto-Express, Onto-Compare, Onto-Design, Onto-Translate, Onto-Miner, Pathway-Express, Promoter-Express, nsSNPCounter, OE2GO, KUTE-BASE.
OpenBUGS - Bayesian inference using Gibbs sampling.
Open Code - A tool for coding qualitative data generated from text information such as interviews, observations or field notes.
OpenEpi - Epidemiology package.
OpenOffice - Open source alternative to Microsoft Office. Includes Calc, an alternative to Excel.
OpenStat - Menu driven general statistics program.
Orange - Data mining through visual programming or Python scripting. Extensions for bioinformatics and text mining.
P
PAFI - A set of programs (LPMiner, SLPMiner and FSG) that can be used to find frequent patterns in large and diverse databases.
PAM
PAMCOMP - Person-years And Mortality COMputation Program.
PARI/GP - Computer algebra system designed for fast computations in number theory (factorizations, algebraic number theory, elliptic curves), and contains functions for mathematical entities such as matrices, polynomials, power series, algebraic numbers etc.
ParMETIS - Extends the functionality provided by METIS and includes routines that are especially suited for parallel
PAST - Statistics program for palaeontology.
PINT - Power analysis IN Two-level designs (for determination of standard errors and optimal sample sizes in multilevel designs with 2 levels).
Ploticus - Graphs program.
PlotLab VCL - Delphi/C++ Builder VCL components library for very fast Data Visualization
PopTools - Population modelling program.
POSDEM - A program to choose between sampling plans based on the population frame.
PostgreSQL - Relational database management system (RDBMS).
PQRS - Stands for probabilities, quantiles and random samples.
Program Mark - Ecological statistics program. Advanced mark-recapture modelling.
PS - Power and sample size calculator.
PSPASES - Parallel SPArse Symmetric dirEct Solver (intended for solving linear systems of equations).
PSPP - Alternative to SPSS. REVIEWED!!!
Q
QCA - Qualitative Comparative Analysis is a special-purpose program designed to analyze quantified data from multiple cases.
QPL - Questionnaire Programming Language.
Quail - Quantitative analysis in Lisp.
R
R - Widely used alternative to SPlus.
R AnalyticFlow - R front-end which allows data analysis by drawing flowcharts.
R Commander - GUI interface for R.
RapidMiner - Data mining.
Red R - Visual programming interface for R.
Regress+ - Mathematical modelling for the Macintosh.
RKWard - A transparent front-end for R.
RMAexpress - Bioinformatics software. A standalone GUI program to compute gene expression summary values for Affymetrix Genechip data.
Rosetta - A rough set toolkit for data analysis / data mining.
RStudio - An integrated development environment (IDE) for R.
Ruby Stats - Port of the statistics libraries from PHPMath.
Rule Discovery System - Data mining program.
Rundom Pro - General stats package with emphasis on resampling procedures.
Rweb - An online form that processes R commands.
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Sage - Mathematics software.
SalStat - General stats package designed for the analysis of science and psychology data.
SaTScan - Analyzes spatial, temporal and space-time data using the spatial, temporal, or space-time scan statistics.
SciDAVis - Scientific Data Analysis and Visualization.
Scilab - Numerical computation.
Shogun - A large scale machine learning toolbox.
SignalLab VCL - Delphi/C++ Builder VCL components library, for fast Digital Signal Processing (DSP) and for data visualization.
Simfit - Simulation, curve fitting, statistics, and plotting.
Simple Solver - Design and analysis of Boolean equations and state machines.
Simplex Method Tool - An online form that solves linear programming problems.
SimulME - A Java ME (J2ME) application with queuing calculator, Monte Carlo simulation and more. Compatible with Sony-Ericsson, Samsung, Motorola and other cell phones.
SINGULAR - Computer algebra system for polynomial computations, with special emphasis on commutative and non-commutative algebra, algebraic geometry, and singularity theory.
SIPINA - Statistical classification program.
SL Gallery - Statistical distribution graphs and calculations.
Smereka - Extensible personal freeform database and personal information manager.
SMILE - Structural Modeling, Inference, and Learning Engine. A library of C++ classes implementing graphical decision-theoretic methods, directly amenable to inclusion in intelligent systems.
SNNS -
SOCR - Stands for statistics online computational resource. General stats package.
SOFA Statistics - Statistics, analysis and reporting program.
Software for Permutation Methods: A Distance Function Approach
SolverStat - Excel add-in which complements Excel's built-in Solver package by providing additional statistical analysis of nonlinear regressions.
Sonar - Survey administration and data collection system.
Sonson - Solution for digitizing vector data from images.
SpeQ Mathematics - Calculations and graphs.
SpreadCE - Spreadsheet program.
SQL Dumper - Allows the dumping of an SQL Server Database into SQL INSERT statements, containing all the data required to create a duplicate table, or to be used for backup purposes.
SSP (Smith's Statistical Package) - General stats package.
StatCalc - A Calculator that computes table values of 34 statistical distributions. It also computes moments, and many other statistics.
StatEasy - General stats package.
Statext - Statistics expressed in text (even the graphs).
Statibot - An interactive www-based expert system for basic statistical analysis.
Statist - General stats package.
Statistical Lab - R based general stats package.
Statistics 101 - Simulations / resampling methods.
STATPerl - General stats package based on Perl.
Stattucino - Web spreadsheets with data analysis functions.
SUGGEST - Recommendation engine.
Swamy TVC Estimation - Econometrics package which performs the time varying coefficient estimation to decompose a set of parameters into their biased and bias free components.
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TAMS - Text mining program. Text Analysis Mark-up System. Identifies themes in texts.
TANAGRA - Data mining program. REVIEWED!!!
TerraView - GIS application that allows database queries and data analysis.
Tetrad - Search algorithms and statistical modelling.
TextStat - Text concordance program. A program for the analysis of texts.
TimesLab - Time series analysis program.
Tinn-R - R code text editor.
TMeV - Bioinformatics software. Normalized and filtered expression files can be analyzed using TIGR Multiexperiment Viewer (MeV).
TMS FlexAnalytics - An app to get statistics from google analytics and chart it automatically.
TSW - Time series and econometrics package.
TWOMOK - Non-parametric scale analysis for two-level data (ecometrics).
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UIMA - Text mining program. Unstructured Information Management Architecture.
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VisiCube - Data visualisation tool.
ViSta - Visual statistics system with work maps, guide maps and interactive graphics.
VStar - Data visualisation and analysis tool for astronomy.
VSUstat - An online statistics program with functions for experimental design and has a layout similar to
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wCLUTO - Web-enabled data clustering application that is designed for the clustering and data-analysis requirements of gene-expression analysis (bioinformatics).
Weft QDA - A tool to assist in the analysis of textual data such as interview transcripts, written texts and field notes.
Weka - Machine learning software written at the University of Waikato.
WinBUGS - Bayesian analysis using Markov chain Monte Carlo methods.
WinIDAMS - General stats package.
Winpepi - Epidemiology package.
WinSAAM - Windows version of CONSAAM. Simulation, analysis and modeling software for biology.
WordNet - A large lexical database of English.
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X-12-ARIMA - Seasonal adjustment software produced, distributed, and maintained by the US Census Bureau.
XDAT - Visualization and analysis of multidimensional data.
XL Statistics - A set of Microsoft Excel (ver 97+) workbooks for statistical analysis of data.
XL Toolbox - Data analysis add-on for Excel.
Xnumbers - Multi precision floating point computing and numerical methods for Excel.
XploRe - Interactive statistical methods and data exploration.
Xpro - Exact parametric inference.
Xtremes - Graphics and analysis program for extreme values.
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YACAS - Computer algebra system for symbolic manipulation of mathematical expressions.
YASSPP - A web-based server for predicting the secondary structure elements of a protein sequence (bioinformatics).
Yorick - Interpreted programming language for scientific simulations or calculations, postprocessing or steering large simulation codes, interactive scientific graphics, and reading, writing, or translating large files of numbers.
Yxilon - Statistical programming language.
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Zaitun Time Series - Time series software. Has the capability to deal with stock market data.
Zelig - Based on R. Automates various processes.
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